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Issue DateTitleAuthor(s)
2006beta-Hairpins with native-like and non-native hydrogen bonding patterns could form during the refolding of staphylococcal nucleasePATEL, S; SISTA, P; BALAJI, PV; SASIDHAR, YU
2015Conformational dynamics of a short antigenic peptide in its free and antibody bound forms gives insight into the role of beta-turns in peptide immunogenicitySHUKLA, RT; SASIDHAR, YU
2000Conformational features of a hexapeptide model Ac-TCAAKA-NH2 corresponding to a hydrated a helical segment from glyceraldehyde 3-phosphate dehydrogenase: Implications for the role of turns in helix foldingSASIDHAR, YU; RAMAKRISHNA, V
1998Conformational features of a peptide model Ac-DTVKLMYKGQPMTFR-NH2, corresponding to an early folding beta hairpin region of Staphylococcal nucleaseRAMAKRISHNA, V; SASIDHAR, YU
1998Conformational features of disulfide intact and reduced forms of hen egg white lysozyme in aqueous solution in the presence of trifluoroethanol (TFE): Implications for protein folding intermediatesRATNAPRABHA, C; SASIDHAR, YU
2000Conformational features of reduced and disulfide intact forms of hen egg white lysozyme in aqueous solution in presence of 3-chloro-1, 2-propanediol and dioxane: Implications for protein folding intermediatesSASIDHAR, YU; PRABHA, CR
2013Energetics of beta-turn formation in a mutant peptide YPGDV from influenza hemagglutinin: an MD simulation studySHUKLA, RT; SASIDHAR, YU
2015Environmental polarity induces conformational transitions in a helical peptide sequence from bacteriophage T4 lysozyme and its tandem duplicate: a molecular dynamics simulation studyKAUR, H; SASIDHAR, YU
2012For the Sequence YKGQ, the Turn and Extended Conformational Forms Are Separated by Small Barriers and the Turn Propensity Persists Even at High Temperatures: Implications for Protein FoldingKAUR, H; SASIDHAR, YU
2005Insights into the role of the aromatic residue in galactose-binding sites: MP2/6-311G++** study on galactose- and glucose-aromatic residue analogue complexesSUJATHA, MS; SASIDHAR, YU; BALAJI, PV
2007Loop propensity of the sequence YKGQP from staphylococcal nuclease: implications for the folding of nucleasePATEL, S; SASIDHAR, YU
2013Molecular dynamics simulations of certain mutant peptide models from staphylococcal nuclease reveal that initial hydrophobic collapse associated with turn propensity drives -hairpin foldingSHUKLA, RT; KUMAR, N; SASIDHAR, YU
2013Molecular dynamics study of an insertion/duplication mutant of bacteriophage T4 lysozyme reveals the nature of alpha -> beta transition in full protein contextKAUR, H; SASIDHAR, YU
2012Molecular simulation and docking studies of Gal1p and Gal3p proteins in the presence and absence of ligands ATP and galactose: implication for transcriptional activation of GAL genesUPADHYAY, SK; SASIDHAR, YU
1997A pentapeptide model for an early folding step in the refolding of staphylococcal nuclease: The role of its turn propensityRAMAKRISHNA, V; SASIDHAR, YU
2013The role of loop closure propensity in the refolding of Rop protein probed by molecular dynamics simulationsSHUKLA, RT; BALIGA, C; SASIDHAR, YU
2007The sequence TGAAKAVALVL from glyceraldehyde-3-phosphate dehydrogenase displays structural ambivalence and interconverts between alpha-helical and beta-hairpin conformations mediated by collapsed conformational statesPATEL, S; BALAJI, PV; SASIDHAR, YU
2008A shorter peptide model from staphylococcal nuclease for the folding-unfolding equilibrium of a beta-hairpin shows that unfolded state has significant contribution from compact conformational statesPATEL, S; SASIDHAR, YU
2007A small tripeptide AFA undergoes two state cooperative conformational transitions: Implications for conformational biases in unfolded statesPATEL, S; TAIMNI, R; SASIDHAR, YU
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